Software available on ARCTIC systems
| 1 | advisor/2022.1.0 | Intel modules (design and analysis tool for developing performant code) | |
| 2 | advisor/latest | Intel modules | |
| 3 | afni/22.2.05 | set of C Programs for processing MRI (FMRI) data | |
| 4 | amber/20 | suite of biomolecular simulation program | |
| 5 | ambertools/22 | Molecular dynamics simulation | |
| 6 | ants/2.4.2 | computes high-dimensional mappings to capture the statistics of brain structure and function | |
| 7 | apache-ant/1.10.12 | Java build system | |
| 8 | apache-jena-fuseki/4.6.1 | It can run as an operating system service, as a Java web application (WAR file), and as a standalone server. | |
| 9 | blas/3.10.0 | routines that provide standard building blocks for performing basic vector and matrix operations. | |
| 10 | boost/1.66.0 | set of libraries for the C++ programming language that provides support for tasks and structures such as linear algebra, pseudorandom number generation, multithreading, image processing, regular expressions, and unit testing. | |
| 11 | bowtie2/2.5.0 | ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. | |
| 12 | bowtie2/2.5.1 | ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. | |
| 13 | ccl/2021.6.0 | Intel modules (Library enables developers and researchers to more quickly train newer and deeper models.) | |
| 14 | ccl/latest | Intel modules (Library enables developers and researchers to more quickly train newer and deeper models.) | |
| 15 | clck/2021.6.0 | Intel modules (provides tools to collect data from the cluster, analysis of the collected data, and provides a clear report of the analysis) | |
| 16 | clck/latest | Intel modules (provides tools to collect data from the cluster, analysis of the collected data, and provides a clear report of the analysis) | |
| 17 | cmake/3.22.5-GCC-9.4.0 | software for build automation, testing, packaging and installation of software by using a compiler-independent method. | |
| 18 | compiler/2022.1.0 | intel compiler / C C++ Fortran | |
| 19 | compiler/latest | intel compiler / C C++ Fortran | |
| 20 | compiler32/2022.1.0 | intel compiler / C C++ Fortran | |
| 21 | compiler32/latest | intel compiler runtime/ C C++ Fortran | |
| 22 | compiler-rt/2022.1.0 | intel compiler runtime/ C C++ Fortran | |
| 23 | compiler-rt/latest | intel compiler runtime/ C C++ Fortran | |
| 24 | compiler-rt32/2022.1.0 | intel compiler runtime/ C C++ Fortran | |
| 25 | compiler-rt32/latest | Intel modules | |
| 26 | compucell3d/4.3.1 | build and run simple simulations such as cell-sorting, bacterium macrophage or cell-type-oscillator. | |
| 27 | compucell3d/4.3.2 | build and run simple simulations such as cell-sorting, bacterium macrophage or cell-type-oscillator. | |
| 28 | cuda/10.2 | provides a development environment for creating high performance GPU-accelerated applications. | |
| 29 | cuda/11.7 | provides a development environment for creating high performance GPU-accelerated applications. | |
| 30 | cufflinks/2.2.1 | suite of tools for differential gene expression analysis of RNA-seq data | |
| 31 | dal/2021.6.0 | Intel Dynamic Application Loader | |
| 32 | dal/latest | Intel Dynamic Application Loader | |
| 33 | dcm2niix/1.0.20220720 | convert neuroimaging data from the DICOM format to the NIfTI format. | |
| 34 | debugger/2021.6.0 | Intel debugger | |
| 35 | debugger/latest | Intel debugger | |
| 36 | dev-utilities/2021.6.0 | Intel development untilities | |
| 37 | dev-utilities/latest | Intel development untilities | |
| 38 | dnnl/2022.1.0 | Intel deep neural network library | |
| 39 | dnnl/latest | Intel deep neural network library | |
| 40 | dnnl-cpu-gomp/2022.1.0 | Intel neural network library gnu openMP | |
| 41 | dnnl-cpu-gomp/latest | Intel neural network library gnu openMP | |
| 42 | dnnl-cpu-iomp/2022.1.0 | Intel neural network library intel openMP | |
| 43 | dnnl-cpu-iomp/latest | Intel neural network library intel openMP | |
| 44 | dnnl-cpu-tbb/2022.1.0 | Intel neural network library intel thread building blocks | |
| 45 | dnnl-cpu-tbb/latest | Intel neural network library intel thread building blocks | |
| 46 | dos2unix/7.4.3 | A program that converts plain text files in DOS/MAC format to UNIX format. | |
| 47 | dpct/2022.1.0 | Intel compatibility tool to migrate from CUDA code to SYCL | |
| 48 | dpct/latest | Intel compatibility tool to migrate from CUDA code to SYCL | |
| 49 | dpl/2021.7.0 | Intel Data Parallel C++ | |
| 50 | dpl/latest | Intel Data Parallel C++ | |
| 51 | ezdyson/5.0 | C++ code that calculates absolute photodetachment/ photoionization cross sections, photoelectron angular distributions (PADs), and anisotropy parameters (beta) using Dyson orbitals computed by an ab initio program. | |
| 52 | ezfcf/1.2 | computes stick spectra (photoelectron and photoexcitation) for polyatomic molecules within the double–harmonic approximation. | |
| 53 | freesurfer/7.3.2 | open source package for the analysis and visualization of structural, functional, and diffusion neuroimaging data from cross-sectional and longitudinal studies. | |
| 54 | fsl/6.0.5.2 | A comprehensive library of analysis tools for FMRI, MRI, and DTI brain imaging data. | |
| 55 | gaussian/16 | software for electronic structure modeling | |
| 56 | geant4/11.1.0 | Toolkit for the simulation of the passage of particles through matter. | |
| 5 | go/1.19 | programming language | |
| 58 | gromacs/2022.3 | software suite for high-performance molecular dynamics and output analysis | |
| 59 | gsl/2.5 | numerical library for C and C++ programmers. | |
| 60 | gsl/2.7 | numerical library for C and C++ programmers. | |
| 61 | htslib/1.16 | unified C library for accessing common file formats, such as SAM, CRAM and VCF, used for high-throughput sequencing data, and is the core library used by samtools and bcftools. | |
| 62 | icc/2022.1.0 | Intel c compiler | |
| 63 | icc/latest | Intel c compiler | |
| 64 | icc32/2022.1.0 | Intel c 32-bit compiler | |
| 65 | icc32/latest | Intel c 32-bit compiler | |
| 66 | imagej/1.53t | Java image processing program | |
| 67 | imagemagick/7.1.0-52 | A software suite, used for editing and manipulating digital images. | |
| 68 | init_opencl/2022.1.0 | Intel openCL compiler library | |
| 69 | init_opencl/latest | Intel openCL compiler library | |
| 70 | inspector/2022.1.0 | Intel threading & memory debugger | |
| 71 | inspector/latest | Intel threading & memory debugger | |
| 72 | intel_ipp_intel64/2021.6.0 | Intel Integrated Performance Primitives | |
| 73 | intel_ipp_intel64/latest | Intel Integrated Performance Primitives | |
| 74 | intel_ippcp_intel64/2021.6.0 | Intel Integrated Performance Primitives C++ | |
| 75 | intel_ippcp_intel64/latest | Intel Integrated Performance Primitives C++ | |
| 76 | ior/3.3.0 | parallel I/O benchmarks | |
| 77 | iozone/489-1 | filesystem benchmark tool | |
| 78 | irodsfs/0.8.7 | FUSE implementation of iRODS Client written in Golang | |
| 79 | itac/2021.6.0 | Intel Trace Analyzer for MPI programs | |
| 80 | itac/latest | Intel Trace Analyzer for MPI programs | |
| 81 | jdk/17.0.2 | tools for developing and testing programs written in the Java programming language | |
| 82 | julia/1.6.7 | high-level, general-purpose dynamic programming language. | |
| 83 | lapack/3.10.1 | A software package provides routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems. | |
| 84 | libevent/2.1.7 | software library that provides asynchronous event notifications. | |
| 85 | libevent-core/2.1.7 | software library that provides asynchronous event notifications. | |
| 86 | matlab/R2019b | multi-paradigm programming language and numeric computing environment | |
| 87 | matlab/R2020b | multi-paradigm programming language and numeric computing environment | |
| 88 | matlab/R2022a | multi-paradigm programming language and numeric computing environment | |
| 89 | miniconda3/4.12.0 | A package manager helps you find and install packages | |
| 90 | mkl/2022.1.0 | Intel Math Kernel Library | |
| 91 | mkl/latest | Intel Math Kernel Library | |
| 92 | mkl32/2022.1.0 | Intel Math Kernel Library 32 bit | |
| 93 | mkl32/latest | Intel Math Kernel Library 32 bit | |
| 94 | mpi/2021.6.0 | Intel MPI | |
| 95 | mpi/latest | Intel MPI | |
| 96 | mricron/1.0.20190902 | NIfTI format image viewer. | |
| 97 | mvapich2/2.3.7 | software, based on MPI 3.1 standard, delivers the best performance, scalability and fault tolerance for high-end computing systems and servers | |
| 98 | nsight-systems/2022.2.1 | system-wide performance analysis tool designed to visualize an application's algorithms. | |
| 99 | nvhpc/22.11 | NVIDIA nvcc compiler | |
| 100 | nvhpc-byo-compiler/22.11 | NVIDIA nvcc compiler | |
| 101 | nvhpc-nompi/22.11 | NVIDIA nvcc compiler | |
| 102 | oclfpga/2022.1.0 | Intel modules | |
| 103 | oclfpga/latest | Intel modules | |
| 104 | openblas/0.3.21 | optimized BLAS library | |
| 105 | openmolcas/22.10 | quantum chemistry software package | |
| 106 | openmpi/4.1.4 | Message Passing Interface library | |
| 107 | pipx/1.1.0 | tool to help you install and run end-user applications written in Python | |
| 108 | python/3.8.9 | high-level, general-purpose programming language. | |
| 109 | python/3.9.9 | machine learning framework that accelerates the path from research prototyping to production deployment. | |
| 110 | pytorch/1.13.0 | machine learning framework that accelerates the path from research prototyping to production deployment. | |
| 111 | qt/5.12.11 | software for creating graphical user interfaces as well as cross-platform applications that run on various software and hardware platforms | |
| 112 | qt/5.14.2 | software for creating graphical user interfaces as well as cross-platform applications that run on various software and hardware platforms | |
| 113 | qt/5.7.0 | software for creating graphical user interfaces as well as cross-platform applications that run on various software and hardware platforms | |
| 114 | rclone/1.60.0 | command line computer program to manage or migrate content on cloud and other high latency storage | |
| 115 | r-studio/4.1.2 | integrated development environment for R, a programming language for statistical computing and graphics. | |
| 116 | r-studio-desktop/2022.07.2+576 | integrated development environment for R, a programming language for statistical computing and graphics. | |
| 117 | samtools/1.16.1 | programs for interacting with high-throughput sequencing data. | |
| 118 | sas/9.4 | statistical software suite developed by SAS Institute for data management, advanced analytics, multivariate analysis, business intelligence, criminal investigation, and predictive analytics. | |
| 119 | singularity/3.10.2 | container framework | |
| 120 | spm/12 | software package designed for the analysis of brain imaging data sequences | |
| 121 | stata/MP-17 | A statistical software package developed by StataCorp for data manipulation, visualization, statistics, and automated reporting. | |
| 122 | tbb/2021.6.0 | Intel thread building blocks | |
| 123 | tbb/latest | thread building blocks | |
| 124 | tensorboard/2.10.1 | provides the visualization and tooling needed for machine learning experimentation | |
| 125 | tensorflow/2.10.0 | software library for machine learning and artificial intelligence. | |
| 126 | tensorflow/install-prerequisite | software library for machine learning and artificial intelligence. | |
| 127 | tophat/2.1.1 | bioinformatics tool for the throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies using Bowtie first and then mapping to a reference genome to discover RNA splice | |
| 128 | unrar/6.2.1 | command-line applications for extracting RAR file archives. | |
| 129 | vmd/1.9.4 | molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. | |
| 130 | vpl/2022.1.0 | Intel Video Processing Library | |
| 131 | vpl/latest | Intel Video Processing Library | |
| 132 | vscode/1.74.3 | code editor redefined and optimized for building and debugging modern web and cloud applications. | |
| 133 | vtune/2022.3.0 | Intel VTune performance profiler | |
| 134 | vtune/latest | Intel VTune performence profiler | |
| 135 | yaml-cpp/0.7.0 | YAML parser and emitter in C++ matching the YAML | |
| 136 | MariaDB | Relational Database | |
| 137 | PostgresSQL | Relational Database | |
| 138 | Django | Python Web Framework | |
| 139 | Redis | Real Time MemCached Database | |
| 140 | InfluxDB | Time Series Database | |
| 141 | Globus | efficiently, securely, and reliably transfer data directly between systems | |
| 142 | Galaxy | open-source platform for bioinfomatics data analysis | |
| 143 | Spark | Bigdata analytic framework | |
| 144 | deeplabcut | pose estimation based on transfer learning with deep neural networks | |